Publications

Publications by categories in reversed chronological order (generated by jekyll-scholar).

2024

  1. Crykey: rapid identification of SARS-CoV-2 cryptic mutations in wastewater
    Yunxi Liu, Nicolae Sapoval, Pilar Gallego-Garcı́a, and 4 more authors
    Nature Communications, 2024
  2. Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet
    Nicolae Sapoval, Yunxi Liu, Kristen Curry, and 8 more authors
    bioRxiv, 2024

2023

  1. Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
    Michael X Wang, Esther G Lou, Nicolae Sapoval, and 8 more authors
    bioRxiv, 2023
  2. Enabling accurate and early detection of recently emerged SARS-CoV-2 variants of concern in wastewater
    Nicolae Sapoval, Yunxi Liu, Esther G Lou, and 5 more authors
    Nature Communications, 2023
  3. KombOver: Efficient k-core and K-truss based characterization of perturbations within the human gut microbiome
    Nicolae Sapoval, Marko Tanevski, and Todd J Treangen
    In PACIFIC SYMPOSIUM ON BIOCOMPUTING 2024 , 2023

2022

  1. Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters
    Pilar Gallego-Garcı́a, Nair Varela, Nuria Estévez-Gómez, and 8 more authors
    Virus Evolution, 2022
  2. Infectious severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in exhaled aerosols and efficacy of masks during early mild infection
    Oluwasanmi O Adenaiye, Jianyu Lai, P Jacob Mesquita, and 8 more authors
    Clinical Infectious Diseases, 2022
  3. Notes from the field: early evidence of the SARS-CoV-2 B. 1.1. 529 (Omicron) variant in community wastewater—United States, November–December 2021
    Amy E Kirby
    MMWR. Morbidity and Mortality Weekly Report, 2022
  4. Direct comparison of RT-ddPCR and targeted amplicon sequencing for SARS-CoV-2 mutation monitoring in wastewater
    Esther G Lou, Nicolae Sapoval, Camille McCall, and 8 more authors
    Science of The Total Environment, 2022
  5. Current progress and open challenges for applying deep learning across the biosciences
    Nicolae Sapoval, Amirali Aghazadeh, Michael G Nute, and 8 more authors
    Nature Communications, 2022
  6. The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms
    Kimberly Walker, Divya Kalra, Rebecca Lowdon, and 8 more authors
    F1000Research, 2022
  7. KOMB: K-core based de novo characterization of copy number variation in microbiomes
    Advait Balaji, Nicolae Sapoval, Charlie Seto, and 6 more authors
    Computational and Structural Biotechnology Journal, 2022

2021

  1. SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission
    Nicolae Sapoval, Medhat Mahmoud, Michael D Jochum, and 8 more authors
    Genome research, 2021
  2. Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets
    Bryce Kille, Yunxi Liu, Nicolae Sapoval, and 4 more authors
    In 2021 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) , 2021
  3. Role of miR-2392 in driving SARS-CoV-2 infection
    J Tyson McDonald, Francisco J Enguita, Deanne Taylor, and 8 more authors
    Cell reports, 2021
  4. Intrahost-diversity of influenza A virus in upper and lower respiratory tract derived samples from a college community
    Nicolae Sapoval, P Jacob Bueno Mesquita, Yunxi Liu, and 8 more authors
    medRxiv, 2021
  5. An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates
    Ann M Mc Cartney, Medhat Mahmoud, Michael Jochum, and 8 more authors
    F1000Research, 2021

2019

  1. A New Open Structure of the Insulin Degrading Enzyme Provides Insights into the Conformational Transition of the Molecule
    Nicolae Sapoval, Esmael J Haddadian, and Wei Jen Tang
    Biophysical Journal, 2019

2018

  1. Coexistence of Wi-Fi and WAVE in the DSRC Spectrum: Impact on WAVE Latency and Throughput
    Monisha Ghosh, Nicolae Sapoval, and Syed Khaled Mahmud
    2018

2010

  1. Regulile şi proprietăţi codării şi decodării
    Nicolae Șapoval
    In National Student Conference “Spre Viitor” , 2010